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[Timothée Nicolas <>]

Ha ha it was that simple !

That's fixed. Thanks A LOT ! Can't wait to test it on my more ambitious case now !

Timothée

2016-04-14 22:35 GMT+09:00 Jane Tournois <>:

Ok, I understand.

Just add an extra empty line at the end of your off file and it will be fixed.

I did not re-test but I think this has been fixed in CGAL-4.8, but anyway it's an easy workaround

Best,
Jane.

Le 14/04/2016 14:33, Timothée Nicolas a écrit :

I have attached the file I am using. This is exactly the same file as was provided with the package, there is not a coma of change. I believe it does use Polyhedral_mesh_domain constructor, if m understanding is correct. I compile it (along with the other files in CGAL-4.7/examples/Mesh_3) with 

cmake .

make

I replace the original data/elephant.off with my own .off file, so now data/elephant.off contains

OFF
5 6 0

0.0 0.0 0.0
1.0 0.0 0.0
1.0 1.0 0.0
0.0 1.0 0.0
0.5 0.5 1.0
3 2 1 0
3 3 2 0
3 0 1 4
3 1 2 4
3 2 3 4
3 3 0 4

(also attached)

Then I simply do

./mesh_polyhedral_domain

And even when I add the #define CGAL_MESH_3_VERBOSE line at the beginning, the only output I get is

Erreur de segmentation (core dumped)

Instead, with the original file, I obtain the following quite long output:

construct initial points:
8/8 initial point(s) found...
Start surface scan...Scanning triangulation for bad facets (sequential) - number of finite facets = 26...
Number of bad facets: 12
end scan. [Bad facets:12]

Refining Surface...
Legend of the following line: (#vertices,#steps,#facets to refine,#tets to refine)
(754,745,0,0) (10039.3 vertices/s))
Total refining surface time: 0.074208s

Start volume scan...Scanning triangulation for bad cells (sequential)... 4725 cells scanned, done.
Number of bad cells: 31
end scan. [Bad tets:31]

Refining...
Legend of the following line: (#vertices,#steps,#facets to refine,#tets to refine)
(760,5,0,0) (13812.2 vertices/s)
Total refining volume time: 0.000374s
Total refining time: 0.077584s

Start surface scan...Scanning triangulation for bad facets (sequential) - number of finite facets = 9517...
Number of bad facets: 0
end scan. [Bad facets:0]

Refining Surface...
Legend of the following line: (#vertices,#steps,#facets to refine,#tets to refine)
(760,0,0,0)
Total refining surface time: 0s

Start volume scan...Scanning triangulation for bad cells (sequential)... 4708 cells scanned, done.
Number of bad cells: 1271
end scan. [Bad tets:1271]

Refining...
Legend of the following line: (#vertices,#steps,#facets to refine,#tets to refine)
(1912,1589,0,0) (18002.2 vertices/s))))
Total refining volume time: 0.088267s
Total refining time: 0.111051s

Running sliver perturbation...
Legend of the following line: (#vertices in pqueue, #iterations, #fails)
bound 12: (0,41,0) (479.9 iteration/s))
Total perturbation time: 0.085439s
Perturbation statistics:
Sq radius gradient perturbation: 93.0769% (121 in 58ms)
Volume gradient perturbation: 3.07692% (4 in 6ms)
Dihedral angle gradient perturbation: 3.07692% (4 in 5ms)
Li random perturbation [100, 0.15, in]: 0.769231% (1 in 0ms)
Perturbation return code: BOUND_REACHED

Exuding...
Legend of the following line: (#cells left,#vertices pumped,#vertices ignored)
(6550,238,4087) (36781.1 vertices/s)
Total exuding time: 0.111117s
Exuding return code: TIME_LIMIT_REACHED

2016-04-14 21:05 GMT+09:00 Jane Tournois <>:

Can you please send us your command line, and the complete log, until "Segmentation fault" happens?

Are you using the Polyhedral_mesh_domain constructor that takes a filename as parameter?

Le 14/04/2016 13:52, Timothée Nicolas a écrit :

Good question.

I am using CGAL-4.7

2016-04-14 20:49 GMT+09:00 Andreas Fabri <>:

Are you both sure to use the same releases of CGAL?

andreas


On 14/04/2016 13:48, Timothée Nicolas wrote:

Thank you for your answer.

So you say you were able to produce a valid out.mesh file with the .off
file I suggested ?

I just checked on my Ubuntu computer, and it does the same as this
afternoon at work on a Mac OS X. The error message here is

Erreur de segmentation (core dumped)

If I remember correctly, on the mac, it was something like

Segmentation fault:11

I have added the verbose line you sent me, and it does not tell me
anything else...

Timothée

2016-04-14 19:45 GMT+09:00 Jane Tournois
<
<mailto:>>:

    Hi Timothee,

    I could not reproduce your seg fault.

    You can try to add the following macro definition on the very first
    line of your cpp file :
    #define CGAL_MESH_3_VERBOSE

    and then post the execution log?

    This could help you or us find the error.


    Also, you mention an "error message". What does it say ?

    Best,

    Jane.

    --
    Jane Tournois, PhD
    R&D Engineer at GeometryFactory
    http://www.geometryfactory.com/





    Le 14/04/2016 10:18, Timothée Nicolas a écrit :

        Dear all,

        I am trying to produce a 3D tetrahedral mesh from a boundary
        surface mesh. I
        figured that the easiest way to do this was to use a .OFF file of my
        boundary, which does not seem too difficult to produce, and feed
        it directly
        to this example program

        http://doc.cgal.org/latest/Mesh_3/Mesh_3_2mesh_polyhedral_domain_8cpp-example.html

        Before taking on my actual boundary surface mesh, I need to
        understand
        exactly what I am doing, so I tried replacing the file
        elephant.off with the
        following simple .off file representing a pyramid

        OFF
        5 6 0

        0.0 0.0 0.0
        1.0 0.0 0.0
        1.0 1.0 0.0
        0.0 1.0 0.0
        0.5 0.5 1.0
        3 2 1 0
        3 3 2 0
        3 0 1 4
        3 1 2 4
        3 2 3 4
        3 3 0 4

        Unfortunately this produces a segmentation fault when making the
        mesh. I
        have no idea what causes it to malfunction. Anyone has a clue ?
        I have also
        tried with a simple tetrahedron or a cube with each face cut
        into two
        triangles, same error message.

        Best

        Timothee



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--
Andreas Fabri, PhD
Chief Officer, GeometryFactory
Editor, The CGAL Project

phone: +33.492.954.912    skype: andreas.fabri

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-- 
Jane Tournois, PhD
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http://www.geometryfactory.com/

-- 
Jane Tournois, PhD
R&D Engineer at GeometryFactory
http://www.geometryfactory.com/