The Coq mailing list

["GRLMC" <grlmc AT urv.cat>]

*To be removed from our mailing list, please respond to this message with 
UNSUBSCRIBE in the subject line*

*********************************************************************

1st INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY

AlCoB 2014

Tarragona, Spain

July 1-3, 2014

http://grammars.grlmc.com/alcob2014/

*********************************************************************

PROGRAM

Tuesday, July 1:

9:15 - 10:15    Registration

10:15 - 10:25   Opening

10:25 - 11:15   Michael Galperin: Comparative Genomics Approaches to 
Identifying Functionally Related Genes – Invited Lecture

11:15 - 11:45   Coffee Break

11:45 - 13:00   Liana Amaya Moreno, Ozlem Defterli, Armin Fügenschuh, 
Gerhard-Wilhelm Weber: Vester's Sensitivity Model for Genetic Networks with 
Time-Discrete Dynamics

Sebastian Wandelt, Ulf Leser: RRCA: Ultra-fast Multiple In-Species Genome 
Alignments

David A. Rosenblueth, Stalin Muñoz, Miguel Carrillo, Eugenio Azpeitia: 
Inference of Boolean Networks from Gene Interaction Graphs using a SAT Solver

13:00 - 14:30   Lunch

14:30 - 15:45   Laurent Lemarchand, Reinhardt Euler, Congping Lin, Imogen 
Sparkes: Modeling the Geometry of the Endoplasmic Reticulum Network

Sean Maxwell, Mark R. Chance, Mehmet Koyutürk: Efficiently Enumerating All 
Connected Induced Subgraphs of a Large Molecular Network

Bogdan Iancu, Diana-Elena Gratie, Sepinoud Azimi, Ion Petre: On the 
Implementation of Quantitative Model Refinement

15:45 - 16:00   Break

16:00 - 16:50   Jason Papin: Network Analysis of Microbial Pathogens – 
Invited Lecture

Wednesday, July 2:

9:00 - 9:50     Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and 
RNA (I) – Invited Tutorial

9:50 - 10:00    Break

10:00 - 11:15   Dimitris Polychronopoulos, Anastasia Krithara, Christoforos 
Nikolaou, Giorgos Paliouras, Yannis Almirantis, George Giannakopoulos: 
Analysis and Classification of Constrained DNA Elements with N-gram Graphs 
and Genomic Signatures

Inken Wohlers, Mathilde Le Boudic-Jamin, Hristo Djidjev, Gunnar W. Klau, 
Rumen Andonov: Exact Protein Structure Classification Using the Maximum 
Contact Map Overlap Metric

Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, 
Yosuke Kawai, Yumi Yamaguchi-Kabata, Testuo Shibuya, Masao Nagasaki: SVEM: A 
Structural Variant Estimation Method using Multi-Mapped Reads on Breakpoints

11:15 - 11:45   Coffee Break

11:45 - 13:00   Claire Lemaitre, Liviu Ciortuz, Pierre Peterlongo: 
Mapping-free and Assembly-free Discovery of Inversion Breakpoints from Raw 
NGS Reads

Giuseppe Narzisi, Bud Mishra, Michael C. Schatz: On Algorithmic Complexity of 
Biomolecular Sequence Assembly Problem

Ivo Hedtke, Ioana Lemnian, Matthias Müller-Hannemann, Ivo Grosse: On Optimal 
Read Trimming in Next Generation Sequencing and Its Complexity

13:00 - 14:30   Lunch

14:30 - 15:20   Annie Chateau, Rodolphe Giroudeau: Complexity and 
Polynomial-Time Approximation Algorithms around the Scaffolding Problem

Ernst Althaus, Andreas Hildebrandt, Anna Katharina Hildebrandt: A Greedy 
Algorithm for Hierarchical Complete Linkage Clustering

15:30   Visit of the City

Thursday, July 3:

9:00 - 9:50     Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and 
RNA (II) – Invited Tutorial

9:50 - 10:00    Break

10:00 - 11:15   Carla Negri Lintzmayer, Zanoni Dias: On Sorting of Signed 
Permutations by Prefix and Suffix Reversals and Transpositions

Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias: Heuristics for the Sorting 
by Length-Weighted Inversions Problem on Signed Permutations

Alexander Grigoriev, Steven Kelk, Nela Lekić: On Low Treewidth Graphs and 
Supertrees

11:15 - 11:45   Coffee Break

11:45 - 13:00   Carla Negri Lintzmayer, Zanoni Dias: On the Diameter of 
Rearrangement Problems

Amina Noor, Aitzaz Ahmad, Bilal Wajid, Erchin Serpedin, Mohamed Nounou, Hazem 
Nounou: A Closed-Form Solution for Transcription Factor Activity Estimation 
using Network Component Analysis

Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto 
Sato, Yosuke Kawai, Masao Nagasaki: HapMonster: A Statistically Unified 
Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads

13:00           Closing