Re: [Starpu-devel] Compiling starpu on Mac OS

[tog <guillaume.alleon@gmail.com>]

Hi

Thanks for the info.

I would also appreciate if you could comment on the need for MAGMA,
FFTW or any BLAS library as I have noticed that configure is looking
for the presence of such libraries.

Is there also a way to switch to OpenCL instead of using CUDA ?

Thanks for your help

Best Regards
Guillaume

On Thu, Mar 31, 2011 at 7:47 PM, Nathalie Furmento
<nathalie.furmento@labri.fr> wrote:
> Hi,
>
> We found out what the problem is. On our machines, we are using a linker
> which automatically adds the dependencies of the specified libraries. Your
> linker does not seem to do it. This is clearly a problem with the
> compilation system of StarPU, i am currently working on fixing it, it might
> take a while (but it will very likely be done by tomorrow evening).
>
> Regards,
>
> Nathalie
>
>
> On 31/03/2011 13:17, tog wrote:
>
> Bonjour
>
> Here it is.
>
> Guillaume
>
> On Thu, Mar 31, 2011 at 4:33 PM, Cedric Augonnet
> <cedric.augonnet@inria.fr> wrote:
>
>
> Hello,
>
> Thanks a lot for reporting this issue! Perhaps there is some
> DYLD_LIBRARY_PATH to the CUDA library that is missing in your
> environment? Could you please send us the config.log file generated
> during the configure step?
>
> Thanks,
> Cédric
>
> Le 31/03/2011 11:47, tog a écrit :
>
>
> Hi,
>
> Machine: MacBook Pro running Snow Leopard.
> nvcc -V says:
>
> oggy:starpu alleon$ nvcc -V
> nvcc: NVIDIA (R) Cuda compiler driver
> Copyright (c) 2005-2010 NVIDIA Corporation
> Built on Thu_Nov_11_15:26:50_PST_2010
> Cuda compilation tools, release 3.2, V0.2.1221
>
>
> I would like to evaluate starpu. I just grab the sources from svn (rev 3420)
> autogen.sh&&  ./configure&&  make
>
> Compilation is going file until the link which fails.
> I noticed that I am using CUDA and not OpenCL. Is that OK ?
>
> Then what am I doing wrong ?
>
> Thanks for your help.
> Guillaume
>
> libtool: link: gcc -dynamiclib  -o .libs/libstarpu.0.dylib
> .libs/libstarpu_la-barrier.o .libs/libstarpu_la-hash.o
> .libs/libstarpu_la-htable32.o .libs/libstarpu_la-rwlock.o
> .libs/libstarpu_la-starpu_spinlock.o .libs/libstarpu_la-timing.o
> .libs/libstarpu_la-fxt.o .libs/libstarpu_la-utils.o
> .libs/libstarpu_la-jobs.o .libs/libstarpu_la-task.o
> .libs/libstarpu_la-task_bundle.o .libs/libstarpu_la-workers.o
> .libs/libstarpu_la-combined_workers.o .libs/libstarpu_la-topology.o
> .libs/libstarpu_la-debug.o .libs/libstarpu_la-errorcheck.o
> .libs/libstarpu_la-progress_hook.o .libs/libstarpu_la-cg.o
> .libs/libstarpu_la-dependencies.o
> .libs/libstarpu_la-implicit_data_deps.o .libs/libstarpu_la-tags.o
> .libs/libstarpu_la-task_deps.o .libs/libstarpu_la-htable.o
> .libs/libstarpu_la-data_concurrency.o
> .libs/libstarpu_la-perfmodel_history.o
> .libs/libstarpu_la-perfmodel_bus.o .libs/libstarpu_la-perfmodel.o
> .libs/libstarpu_la-regression.o .libs/libstarpu_la-sched_policy.o
> .libs/libstarpu_la-priorities.o .libs/libstarpu_la-parallel_task.o
> .libs/libstarpu_la-eager_central_policy.o
> .libs/libstarpu_la-eager_central_priority_policy.o
> .libs/libstarpu_la-work_stealing_policy.o
> .libs/libstarpu_la-deque_modeling_policy_data_aware.o
> .libs/libstarpu_la-heft.o .libs/libstarpu_la-random_policy.o
> .libs/libstarpu_la-stack_queues.o .libs/libstarpu_la-deque_queues.o
> .libs/libstarpu_la-fifo_queues.o
> .libs/libstarpu_la-detect_combined_workers.o
> .libs/libstarpu_la-parallel_heft.o
> .libs/libstarpu_la-parallel_greedy.o
> .libs/libstarpu_la-driver_common.o .libs/libstarpu_la-memory_nodes.o
> .libs/libstarpu_la-write_back.o .libs/libstarpu_la-coherency.o
> .libs/libstarpu_la-data_request.o .libs/libstarpu_la-progress.o
> .libs/libstarpu_la-copy_driver.o .libs/libstarpu_la-filters.o
> .libs/libstarpu_la-sort_data_handles.o .libs/libstarpu_la-memalloc.o
> .libs/libstarpu_la-footprint.o .libs/libstarpu_la-datastats.o
> .libs/libstarpu_la-user_interactions.o .libs/libstarpu_la-reduction.o
> .libs/libstarpu_la-data_interface.o
> .libs/libstarpu_la-bcsr_interface.o .libs/libstarpu_la-csr_interface.o
> .libs/libstarpu_la-matrix_filters.o
> .libs/libstarpu_la-matrix_interface.o
> .libs/libstarpu_la-block_filters.o
> .libs/libstarpu_la-block_interface.o
> .libs/libstarpu_la-vector_interface.o
> .libs/libstarpu_la-bcsr_filters.o .libs/libstarpu_la-csr_filters.o
> .libs/libstarpu_la-vector_filters.o
> .libs/libstarpu_la-variable_interface.o
> .libs/libstarpu_la-void_interface.o .libs/libstarpu_la-malloc.o
> .libs/libstarpu_la-execute_on_all.o
> .libs/libstarpu_la-starpu_create_sync_task.o
> .libs/libstarpu_la-starpu_cublas.o .libs/libstarpu_la-file.o
> .libs/libstarpu_la-starpu_data_cpy.o
> .libs/libstarpu_la-starpu_insert_task.o
> .libs/libstarpu_la-starpu_insert_task_utils.o
> .libs/libstarpu_la-starpu_task_list.o .libs/libstarpu_la-starpu_fxt.o
> .libs/libstarpu_la-starpu_fxt_mpi.o
> .libs/libstarpu_la-starpu_fxt_dag.o .libs/libstarpu_la-starpu_paje.o
> .libs/libstarpu_la-latency.o .libs/libstarpu_la-structures_size.o
> .libs/libstarpu_la-profiling.o .libs/libstarpu_la-bound.o
> .libs/libstarpu_la-profiling_helpers.o .libs/libstarpu_la-driver_cpu.o
> .libs/libstarpu_la-driver_cuda.o   -L/usr/local/cuda/lib -lm -lblas
> -lcurand -lcublas -lpthread    -install_name
> /usr/local/lib/libstarpu.0.dylib -compatibility_version 1
> -current_version 1.0 -Wl,-single_module
> Undefined symbols:
>    "_cudaThreadExit", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaMemcpy2D", referenced from:
>        _copy_ram_to_cuda_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_ram in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-matrix_interface.o
>        _copy_ram_to_cuda in libstarpu_la-matrix_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>    "_cudaMemcpy2DAsync", referenced from:
>        _copy_ram_to_cuda_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>    "_cudaFree", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _free_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _free_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _free_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _allocate_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _allocate_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _free_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _free_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _free_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _allocate_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _allocate_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _free_matrix_buffer_on_node in libstarpu_la-matrix_interface.o
>        _free_block_buffer_on_node in libstarpu_la-block_interface.o
>        _free_vector_buffer_on_node in libstarpu_la-vector_interface.o
>        _free_variable_buffer_on_node in libstarpu_la-variable_interface.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaHostAlloc", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _malloc_pinned_cuda_codelet in libstarpu_la-malloc.o
>    "_cudaEventCreate", referenced from:
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>    "_cudaMemcpy", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-vector_interface.o
>        _copy_cuda_to_ram in libstarpu_la-vector_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-vector_interface.o
>        _copy_ram_to_cuda in libstarpu_la-vector_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-variable_interface.o
>        _copy_cuda_to_ram in libstarpu_la-variable_interface.o
>        _copy_ram_to_cuda_async in libstarpu_la-variable_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-variable_interface.o
>        _copy_ram_to_cuda in libstarpu_la-variable_interface.o
>    "_cudaEventSynchronize", referenced from:
>        __starpu_driver_wait_request_completion in libstarpu_la-copy_driver.o
>    "_cudaThreadSynchronize", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>    "_cudaEventRecord", referenced from:
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>    "_cudaMemcpyAsync", referenced from:
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-vector_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-variable_interface.o
>        _copy_ram_to_cuda_async in libstarpu_la-variable_interface.o
>    "_cudaGetErrorString", referenced from:
>        __starpu_driver_wait_request_completion in libstarpu_la-copy_driver.o
>        __starpu_driver_wait_request_completion in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_ram_to_cuda_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_ram in libstarpu_la-matrix_interface.o
>        _free_matrix_buffer_on_node in libstarpu_la-matrix_interface.o
>        _allocate_matrix_buffer_on_node in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-matrix_interface.o
>        _copy_ram_to_cuda in libstarpu_la-matrix_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>        _free_block_buffer_on_node in libstarpu_la-block_interface.o
>        _allocate_block_buffer_on_node in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-vector_interface.o
>        _copy_cuda_to_ram in libstarpu_la-vector_interface.o
>        _allocate_vector_buffer_on_node in libstarpu_la-vector_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-vector_interface.o
>        _copy_ram_to_cuda in libstarpu_la-vector_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-variable_interface.o
>        _copy_cuda_to_ram in libstarpu_la-variable_interface.o
>        _allocate_variable_buffer_on_node in
> libstarpu_la-variable_interface.o
>        _copy_ram_to_cuda_async in libstarpu_la-variable_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-variable_interface.o
>        _copy_ram_to_cuda in libstarpu_la-variable_interface.o
>        _free_pinned_cuda_codelet in libstarpu_la-malloc.o
>        _malloc_pinned_cuda_codelet in libstarpu_la-malloc.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaEventDestroy", referenced from:
>        __starpu_driver_test_request_completion in libstarpu_la-copy_driver.o
>        __starpu_driver_wait_request_completion in libstarpu_la-copy_driver.o
>    "_cudaMemset", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>    "_cudaEventQuery", referenced from:
>        __starpu_driver_test_request_completion in libstarpu_la-copy_driver.o
>    "_cudaGetDeviceCount", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        __starpu_load_bus_performance_files in libstarpu_la-perfmodel_bus.o
>        __starpu_load_bus_performance_files in libstarpu_la-perfmodel_bus.o
>        __starpu_get_cuda_device_count in libstarpu_la-driver_cuda.o
>        __starpu_init_cuda in libstarpu_la-driver_cuda.o
>    "_cudaFreeHost", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _free_pinned_cuda_codelet in libstarpu_la-malloc.o
>    "_cudaGetDeviceProperties", referenced from:
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaMalloc", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _allocate_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _allocate_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _allocate_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _allocate_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _allocate_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _allocate_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _allocate_matrix_buffer_on_node in libstarpu_la-matrix_interface.o
>        _allocate_block_buffer_on_node in libstarpu_la-block_interface.o
>        _allocate_vector_buffer_on_node in libstarpu_la-vector_interface.o
>        _allocate_variable_buffer_on_node in
> libstarpu_la-variable_interface.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaStreamDestroy", referenced from:
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaStreamSynchronize", referenced from:
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaSetDevice", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaStreamCreate", referenced from:
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
> ld: symbol(s) not found
> collect2: ld returned 1 exit status
> make[2]: *** [libstarpu.la] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all-recursive] Error 1
>
>
>
>
> --
> Cédric AUGONNET
> PhD student -- Runtime Team
> INRIA Bordeaux - LaBRI
> Tel: [33] (0)5 24 57 40 74
>
>
>
>
>
> _______________________________________________
> Starpu-devel mailing list
> Starpu-devel@lists.gforge.inria.fr
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>
>
> --
>
> ----------------------------------------------------------------------------
> Dr Nathalie Furmento                         CNRS R&D Engineer
> Centre de Recherche INRIA Bordeaux Sud-Ouest http://www.labri.fr/~furmento/
> 351 cours de la Libération, Bât A29          Tel: +33 (0)5 24 57 41 20
> 33405 Talence cedex, FRANCE                  Fax: +33 (0)5 24 57 40 41
> ----------------------------------------------------------------------------
>



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