Re: [Starpu-devel] Compiling starpu on Mac OS

[Nathalie Furmento <nathalie.furmento@labri.fr>]

Looks like the new variable STARPU_CUDA_LDFLAGS has not been added when 
calling the linker. I might have forgotten to update some commands.

I supposed you called again "autogen.sh" and "configure" ? Running make 
distclean might also help. Are you getting the error when calling make ? 
Could you please send its whole output ?

Thanks,

Nathalie

On 01/04/2011 15:21, tog wrote:
> Hi,
>
> I did the update but still got a similar problem
> Is there something I can do in order to help you ?
>
> Best Regards
> Guillaume
>
>
> oggy:starpu alleon$ svn update
> U    mpi/Makefile.am
> U    src/Makefile.am
> U    src/datawizard/write_back.c
> U    src/datawizard/coherency.c
> U    tools/Makefile.am
> D    tests/datawizard/wt_broadcast.c
> D    tests/datawizard/wt_host.c
> A    tests/opt
> A    tests/opt/Makefile.am
> A    tests/opt/datawizard
> A    tests/opt/datawizard/wt_host.c
> A    tests/opt/datawizard/wt_broadcast.c
> U    tests/Makefile.am
> U    configure.ac
> U    Makefile.am
> U    examples/stencil/Makefile.am
> U    examples/Makefile.am
> U    examples/starpufft/Makefile.am
> Updated to revision 3436.
>
>
> libtool: link: gcc -dynamiclib  -o .libs/libstarpu.0.dylib
> .libs/libstarpu_la-barrier.o .libs/libstarpu_la-hash.o
> .libs/libstarpu_la-htable32.o .libs/libstarpu_la-rwlock.o
> .libs/libstarpu_la-starpu_spinlock.o .libs/libstarpu_la-timing.o
> .libs/libstarpu_la-fxt.o .libs/libstarpu_la-utils.o
> .libs/libstarpu_la-jobs.o .libs/libstarpu_la-task.o
> .libs/libstarpu_la-task_bundle.o .libs/libstarpu_la-workers.o
> .libs/libstarpu_la-combined_workers.o .libs/libstarpu_la-topology.o
> .libs/libstarpu_la-debug.o .libs/libstarpu_la-errorcheck.o
> .libs/libstarpu_la-progress_hook.o .libs/libstarpu_la-cg.o
> .libs/libstarpu_la-dependencies.o
> .libs/libstarpu_la-implicit_data_deps.o .libs/libstarpu_la-tags.o
> .libs/libstarpu_la-task_deps.o .libs/libstarpu_la-htable.o
> .libs/libstarpu_la-data_concurrency.o
> .libs/libstarpu_la-perfmodel_history.o
> .libs/libstarpu_la-perfmodel_bus.o .libs/libstarpu_la-perfmodel.o
> .libs/libstarpu_la-regression.o .libs/libstarpu_la-sched_policy.o
> .libs/libstarpu_la-priorities.o .libs/libstarpu_la-parallel_task.o
> .libs/libstarpu_la-eager_central_policy.o
> .libs/libstarpu_la-eager_central_priority_policy.o
> .libs/libstarpu_la-work_stealing_policy.o
> .libs/libstarpu_la-deque_modeling_policy_data_aware.o
> .libs/libstarpu_la-heft.o .libs/libstarpu_la-random_policy.o
> .libs/libstarpu_la-stack_queues.o .libs/libstarpu_la-deque_queues.o
> .libs/libstarpu_la-fifo_queues.o
> .libs/libstarpu_la-detect_combined_workers.o
> .libs/libstarpu_la-parallel_heft.o
> .libs/libstarpu_la-parallel_greedy.o
> .libs/libstarpu_la-driver_common.o .libs/libstarpu_la-memory_nodes.o
> .libs/libstarpu_la-write_back.o .libs/libstarpu_la-coherency.o
> .libs/libstarpu_la-data_request.o .libs/libstarpu_la-progress.o
> .libs/libstarpu_la-copy_driver.o .libs/libstarpu_la-filters.o
> .libs/libstarpu_la-sort_data_handles.o .libs/libstarpu_la-memalloc.o
> .libs/libstarpu_la-footprint.o .libs/libstarpu_la-datastats.o
> .libs/libstarpu_la-user_interactions.o .libs/libstarpu_la-reduction.o
> .libs/libstarpu_la-data_interface.o
> .libs/libstarpu_la-bcsr_interface.o .libs/libstarpu_la-csr_interface.o
> .libs/libstarpu_la-matrix_filters.o
> .libs/libstarpu_la-matrix_interface.o
> .libs/libstarpu_la-block_filters.o
> .libs/libstarpu_la-block_interface.o
> .libs/libstarpu_la-vector_interface.o
> .libs/libstarpu_la-bcsr_filters.o .libs/libstarpu_la-csr_filters.o
> .libs/libstarpu_la-vector_filters.o
> .libs/libstarpu_la-variable_interface.o
> .libs/libstarpu_la-void_interface.o .libs/libstarpu_la-malloc.o
> .libs/libstarpu_la-execute_on_all.o
> .libs/libstarpu_la-starpu_create_sync_task.o
> .libs/libstarpu_la-starpu_cublas.o .libs/libstarpu_la-file.o
> .libs/libstarpu_la-starpu_data_cpy.o
> .libs/libstarpu_la-starpu_insert_task.o
> .libs/libstarpu_la-starpu_insert_task_utils.o
> .libs/libstarpu_la-starpu_task_list.o .libs/libstarpu_la-starpu_fxt.o
> .libs/libstarpu_la-starpu_fxt_mpi.o
> .libs/libstarpu_la-starpu_fxt_dag.o .libs/libstarpu_la-starpu_paje.o
> .libs/libstarpu_la-latency.o .libs/libstarpu_la-structures_size.o
> .libs/libstarpu_la-profiling.o .libs/libstarpu_la-bound.o
> .libs/libstarpu_la-profiling_helpers.o .libs/libstarpu_la-driver_cpu.o
> .libs/libstarpu_la-driver_cuda.o   -L/usr/local/cuda/lib -lm -lblas
> -lpthread    -install_name  /usr/local/lib/libstarpu.0.dylib
> -compatibility_version 1 -current_version 1.0 -Wl,-single_module
> Undefined symbols:
>    "_cudaThreadExit", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaMemcpy2D", referenced from:
>        _copy_ram_to_cuda_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_ram in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-matrix_interface.o
>        _copy_ram_to_cuda in libstarpu_la-matrix_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>    "_cudaMemcpy2DAsync", referenced from:
>        _copy_ram_to_cuda_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>    "_cudaFree", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _free_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _free_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _free_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _allocate_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _allocate_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _free_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _free_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _free_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _allocate_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _allocate_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _free_matrix_buffer_on_node in libstarpu_la-matrix_interface.o
>        _free_block_buffer_on_node in libstarpu_la-block_interface.o
>        _free_vector_buffer_on_node in libstarpu_la-vector_interface.o
>        _free_variable_buffer_on_node in libstarpu_la-variable_interface.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaHostAlloc", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _malloc_pinned_cuda_codelet in libstarpu_la-malloc.o
>    "_cudaEventCreate", referenced from:
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>    "_cublasShutdown", referenced from:
>        _shutdown_cublas_func in libstarpu_la-starpu_cublas.o
>    "_cudaMemcpy", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-vector_interface.o
>        _copy_cuda_to_ram in libstarpu_la-vector_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-vector_interface.o
>        _copy_ram_to_cuda in libstarpu_la-vector_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-variable_interface.o
>        _copy_cuda_to_ram in libstarpu_la-variable_interface.o
>        _copy_ram_to_cuda_async in libstarpu_la-variable_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-variable_interface.o
>        _copy_ram_to_cuda in libstarpu_la-variable_interface.o
>    "_cudaEventSynchronize", referenced from:
>        __starpu_driver_wait_request_completion in libstarpu_la-copy_driver.o
>    "_cudaThreadSynchronize", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>    "_cudaEventRecord", referenced from:
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>    "_cudaMemcpyAsync", referenced from:
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-vector_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-variable_interface.o
>        _copy_ram_to_cuda_async in libstarpu_la-variable_interface.o
>    "_cudaGetErrorString", referenced from:
>        __starpu_driver_wait_request_completion in libstarpu_la-copy_driver.o
>        __starpu_driver_wait_request_completion in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        __starpu_driver_copy_data_1_to_1 in libstarpu_la-copy_driver.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-bcsr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_cuda_common in libstarpu_la-csr_interface.o
>        _copy_ram_to_cuda_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_ram in libstarpu_la-matrix_interface.o
>        _free_matrix_buffer_on_node in libstarpu_la-matrix_interface.o
>        _allocate_matrix_buffer_on_node in libstarpu_la-matrix_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-matrix_interface.o
>        _copy_ram_to_cuda in libstarpu_la-matrix_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>        _copy_cuda_common in libstarpu_la-block_interface.o
>        _free_block_buffer_on_node in libstarpu_la-block_interface.o
>        _allocate_block_buffer_on_node in libstarpu_la-block_interface.o
>        _copy_cuda_async_common in libstarpu_la-vector_interface.o
>        _copy_cuda_to_ram in libstarpu_la-vector_interface.o
>        _allocate_vector_buffer_on_node in libstarpu_la-vector_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-vector_interface.o
>        _copy_ram_to_cuda in libstarpu_la-vector_interface.o
>        _copy_cuda_to_ram_async in libstarpu_la-variable_interface.o
>        _copy_cuda_to_ram in libstarpu_la-variable_interface.o
>        _allocate_variable_buffer_on_node in libstarpu_la-variable_interface.o
>        _copy_ram_to_cuda_async in libstarpu_la-variable_interface.o
>        _copy_cuda_to_cuda in libstarpu_la-variable_interface.o
>        _copy_ram_to_cuda in libstarpu_la-variable_interface.o
>        _free_pinned_cuda_codelet in libstarpu_la-malloc.o
>        _malloc_pinned_cuda_codelet in libstarpu_la-malloc.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaEventDestroy", referenced from:
>        __starpu_driver_test_request_completion in libstarpu_la-copy_driver.o
>        __starpu_driver_wait_request_completion in libstarpu_la-copy_driver.o
>    "_cudaMemset", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>    "_cudaEventQuery", referenced from:
>        __starpu_driver_test_request_completion in libstarpu_la-copy_driver.o
>    "_cudaGetDeviceCount", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        __starpu_load_bus_performance_files in libstarpu_la-perfmodel_bus.o
>        __starpu_load_bus_performance_files in libstarpu_la-perfmodel_bus.o
>        __starpu_get_cuda_device_count in libstarpu_la-driver_cuda.o
>        __starpu_init_cuda in libstarpu_la-driver_cuda.o
>    "_cudaFreeHost", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _free_pinned_cuda_codelet in libstarpu_la-malloc.o
>    "_cudaGetDeviceProperties", referenced from:
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaMalloc", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        _allocate_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _allocate_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _allocate_bcsr_buffer_on_node in libstarpu_la-bcsr_interface.o
>        _allocate_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _allocate_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _allocate_csr_buffer_on_node in libstarpu_la-csr_interface.o
>        _allocate_matrix_buffer_on_node in libstarpu_la-matrix_interface.o
>        _allocate_block_buffer_on_node in libstarpu_la-block_interface.o
>        _allocate_vector_buffer_on_node in libstarpu_la-vector_interface.o
>        _allocate_variable_buffer_on_node in libstarpu_la-variable_interface.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaStreamDestroy", referenced from:
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cublasSetKernelStream", referenced from:
>        _init_cublas_func in libstarpu_la-starpu_cublas.o
>    "_cudaStreamSynchronize", referenced from:
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cublasInit", referenced from:
>        _init_cublas_func in libstarpu_la-starpu_cublas.o
>    "_cudaSetDevice", referenced from:
>        _benchmark_all_gpu_devices in libstarpu_la-perfmodel_bus.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>    "_cudaStreamCreate", referenced from:
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
>        __starpu_cuda_worker in libstarpu_la-driver_cuda.o
> ld: symbol(s) not found
> collect2: ld returned 1 exit status
> make[2]: *** [libstarpu.la] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all-recursive] Error 1
>
>
>
>