[Starpu-devel] StarPU Configuration error

[Wafa Nafti <wafa_nafti@yahoo.fr>]

Dear all,

I am trying to use StarPU but I figured out some problems with installing. I am using ubuntu 14.04 LTS 64-bit and I ran commands for installation as was written in documentation.

I get an error during configuration :

$ ./configure --with-hwloc

checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for ar... ar
checking the archiver (ar) interface... ar
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) gcc3
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C preprocessor... gcc -E
checking for a sed that does not truncate output... /bin/sed
checking whether ln -s works... yes
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... no
checking for g95... no
checking for xlf95... no
checking for f95... no
checking for fort... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgfortran... no
checking for pgf95... no
checking for lf95... no
checking for ftn... no
checking for nagfor... no
checking whether we are using the GNU Fortran 77 compiler... no
checking whether  accepts -g... no
checking for gfortran... no
checking for g95... no
checking for xlf95... no
checking for f95... no
checking for fort... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgfortran... no
checking for pgf95... no
checking for lf95... no
checking for ftn... no
checking for nagfor... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking whether we are using the GNU Fortran compiler... no
checking whether  accepts -g... no
checking for gstat... no
checking for stat... stat
checking for gdate... no
checking for date... date
checking for gcc option to support OpenMP... -fopenmp
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether ln -s works... yes
checking for ANSI C header files... (cached) yes
checking for C/C++ restrict keyword... __restrict
checking for bash... /bin/bash
checking for svn... /usr/bin/svn
checking for svnversion... /usr/bin/svnversion
checking for lib... no
checking size of void *... 8
checking for struct timespec... yes
checking for unistd.h... (cached) yes
checking for pthread_create in -lpthread... yes
checking for library containing sqrt... -lm
checking for main in -lws2_32... no
checking for sysconf... yes
checking for pthread_spin_lock... yes
checking for pthread_barrier_init... yes
checking for pthread_setaffinity_np... yes
checking for posix_memalign... yes
checking for memalign... yes
checking for drand48... yes
checking for erand48_r... yes
checking for strerror_r... yes
checking for setenv... yes
checking for unsetenv... yes
checking for nearbyintf... yes
checking for rintf... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking valgrind/valgrind.h usability... no
checking valgrind/valgrind.h presence... no
checking for valgrind/valgrind.h... no
checking valgrind/memcheck.h usability... no
checking valgrind/memcheck.h presence... no
checking for valgrind/memcheck.h... no
checking valgrind/helgrind.h usability... no
checking valgrind/helgrind.h presence... no
checking for valgrind/helgrind.h... no
checking for sched_yield... yes
checking aio.h usability... yes
checking aio.h presence... yes
checking for aio.h... yes
checking for mkostemp... yes
checking for pread... yes
checking for pwrite... yes
checking whether the target supports __sync_val_compare_and_swap... yes
checking whether the target supports __sync_bool_compare_and_swap... yes
checking whether the target supports __sync_fetch_and_add... yes
checking whether the target supports __sync_fetch_and_or... yes
checking whether the target supports __sync_lock_test_and_set... yes
checking whether the target supports __sync_synchronize... yes
checking for library containing set_mempolicy... no
checking whether libnuma is available... no
checking maximum number of sched_ctxs... 10
checking maximum number of CPUs... 64
checking whether CPUs should be used... yes
checking maximum number of CUDA devices... 4
checking whether CUDA is available... 
checking cuda.h usability... no
checking cuda.h presence... no
checking for cuda.h... no
checking whether CUDA is available... 
checking cuda.h usability... no
checking cuda.h presence... no
checking for cuda.h... no
checking whether CUDA is available in /usr/local/cuda... 
checking cuda.h usability... no
checking cuda.h presence... no
checking for cuda.h... no
checking whether CUDA is available in /c/cuda... 
checking cuda.h usability... no
checking cuda.h presence... no
checking for cuda.h... no
checking whether CUDA is available in /cygdrive/c/cuda... 
checking cuda.h usability... no
checking cuda.h presence... no
checking for cuda.h... no
checking whether CUDA is available in /opt/cuda... 
checking cuda.h usability... yes
checking cuda.h presence... yes
checking for cuda.h... yes
checking whether CUDA is available with: -L/opt/cuda/lib64... 
checking for main in -lcuda... yes
checking for main in -lcudart... yes
checking for main in -lcublas... yes
checking for nvcc... not-found
configure: WARNING: 'nvcc' not found, disabling CUDA
checking whether CUDA is available in /..... 
checking cuda.h usability... yes
checking cuda.h presence... yes
checking for cuda.h... yes
checking whether CUDA is available with: -L/../lib64... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib/x64... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib/Win32... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available in /..... 
checking cuda.h usability... yes
checking cuda.h presence... yes
checking for cuda.h... yes
checking whether CUDA is available with: -L/../lib64... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib/x64... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib/Win32... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available in /..... 
checking cuda.h usability... yes
checking cuda.h presence... yes
checking for cuda.h... yes
checking whether CUDA is available with: -L/../lib64... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib/x64... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib/Win32... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available in /..... 
checking cuda.h usability... yes
checking cuda.h presence... yes
checking for cuda.h... yes
checking whether CUDA is available with: -L/../lib64... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib/x64... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is available with: -L/../lib/Win32... 
checking for main in -lcuda... yes
checking for main in -lcudart... no
checking whether CUDA is working... no
checking whether CUDA should be used... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking whether MAGMA should be used... no
checking for cufftDoubleComplex... yes
checking whether CURAND is available... no
checking maximum number of OpenCL devices... 8
checking whether OpenCL is available... 
checking CL/cl.h usability... yes
checking CL/cl.h presence... yes
checking for CL/cl.h... yes
checking whether OpenCL is available in no... 
checking for main in -lOpenCL... yes
checking for main in -lOpenCL... yes
checking for clEnqueueMarkerWithWaitList... yes
checking whether OpenCL should be used... yes
checking whether asynchronous copy should be disabled... no
checking whether asynchronous CUDA copy should be disabled... no
checking whether asynchronous OpenCL copy should be disabled... no
checking whether asynchronous MIC copy should be disabled... no
checking whether SimGrid is enabled... no
checking whether blocking drivers should be enabled... no
checking maximum number of MIC devices... 4
checking maximum number of MIC threads... 
checking RCCE.h usability... no
checking RCCE.h presence... no
checking for RCCE.h... no
checking for RCCE_init in -lRCCE_bigflags_nongory_nopwrmgmt... no
checking whether RCCE should be used... no
checking Maximum number of message-passing kernels... 10
checking whether debug mode should be enabled... no
checking whether extra checks should be performed... no
checking whether debug messages should be displayed... no
checking whether coverage testing should be enabled... no
checking whether FxT traces should be generated... no
checking whether additional locking systems FxT traces should be enabled... no
checking whether performance debugging should be enabled... no
checking whether performance model debugging should be enabled... no
checking whether memory stats should be displayed... no
checking glpk.h usability... no
checking glpk.h presence... no
checking for glpk.h... no
checking for main in -lglpk... no
checking Ayudame.h usability... no
checking Ayudame.h presence... no
checking for Ayudame.h... no
checking how many buffers can be manipulated per task... 8
checking maximum number of nodes to use... checking maximum number of memory nodes... 16
checking whether allocation cache should be used... yes
checking using explicit performance model location... no
checking performance models location... $HOME/.starpu/sampling/
checking for clock_gettime in -lrt... yes
checking for clock_gettime... yes
checking Maximum number of workers... 80
checking Maximum number of workers combinations... 64
checking maximum number of implementations... 4
checking leveldb/db.h usability... no
checking leveldb/db.h presence... no
checking for leveldb/db.h... no
checking for main in -lleveldb... no
checking calibration heuristic of history-based StarPU calibrator... 50
checking for mpicc... no
The mpicc compiler 'no' does not have the execute permission
checking mpicc path... no
checking for mpiexec... no
checking whether mpiexec is available... no
The mpiexec script is not valid
checking whether the StarPU MPI library should be generated... no
checking for StarPU-Top... checking for qmake-qt4... no
checking for qmake... /usr/bin/qmake
./configure: line 30688: test: not: integer _expression_ expected
checking whether compiler support -Wall... yes
checking whether compiler support -Werror=implicit... yes
checking whether compiler support -Werror=implicit-function-declaration... yes
checking whether GCC supports plug-ins... no
configure: WARNING: GCC plug-ins not supported; StarPU's GCC plug-in will not be built
checking for OpenMP runtime support... no
checking for SOCL... yes
checking for clGetExtensionFunctionAddressForPlatform... no
./configure: line 31774: test: argument expected
checking for gdb... /usr/bin/gdb
checking whether OpenGL rendering is enabled... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for library containing sgemm_... no
checking which BLAS lib should be used... none
checking for FFTW... no
checking for FFTWF... no
checking for FFTWL... no
checking for HWLOC... no
configure: error: cannot find hwloc

Knowing that hwloc is already installed.

Could you help me please?

With the best regards,

 

------------------------

Wafa NAFTI

ENSIT, Tunisie